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Crystal structure of M-RAS P40D in complex with gppnhp

Analyse Crystal structure of M-RAS P40D in complex with gppnhp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3KKP
Type: protein
Length: 168 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RAS-related protein M-RAS
UniProt: O08989
Ligands: GNP, MG

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RAS-related protein M-RAS	protein	168	42% helix, 24% strand	O08989

Ligands and binding sites

GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

3KKP · Crystal structure of M-Ras P40D in complex with GppNHp · the same entry in another collection · chain A against A, TM-score 1.00
O08989 · AlphaFold monomer V2.0 prediction for RAS-related protein M-RAS (O08989) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O08989
Elsewhere: RCSB PDB 3KKP · PDBe 3KKP · UniProt O08989

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