Research workbench
Structure of ligand-free PYL2
Analyse Structure of ligand-free PYL2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3KDH
- Type
- protein
- Length
- 561 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein AT2G26040
- UniProt
- O80992
- Pockets
- 8 · best druggability 0.85
Structure
x-ray diffraction · 3 distinct chains · 27% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein AT2G26040 | protein | 189 | 27% helix, 33% strand | O80992 |
| B | Putative uncharacterized protein AT2G26040 | protein | 184 | 28% helix, 35% strand | O80992 |
| C | Putative uncharacterized protein AT2G26040 | protein | 188 | 27% helix, 35% strand | O80992 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1029 | 0.85 | 0.85 | 64 | empty |
| 2 | 376 | 0.73 | 0.84 | 28 | empty |
| 3 | 310 | 0.51 | 0.73 | 50 | empty |
| 4 | 171 | 0.46 | 0.75 | 28 | empty |
| 5 | 76 | 0.38 | 0.78 | 21 | empty |
Interfaces
2 interfaces between chains.
- A–B · 886 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 625 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O80992
- Elsewhere: RCSB PDB 3KDH · PDBe 3KDH · UniProt O80992
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