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Crystal structure of an oxidoreductase from methanosarcina mazei. northeast structural genomics consortium target id MAR208

Analyse Crystal structure of an oxidoreductase from methanosarcina mazei. northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3KA7
Type: protein
Length: 422 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Oxidoreductase
UniProt: Q8PU56
Ligands: FAD
Pockets: 3 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Oxidoreductase	protein	422	36% helix, 26% strand	Q8PU56

Ligands and binding sites

FAD · Flavin-adenine dinucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	838	0.86	0.88	98	FAD
2	70	0.43	0.81	19	empty
3	59	0.38	0.79	13	empty

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

3KA7 · Crystal Structure of an oxidoreductase from Methanosarcina mazei. Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8PU56
Elsewhere: RCSB PDB 3KA7 · PDBe 3KA7 · UniProt Q8PU56

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