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Crystal structure of a plasmid partition protein from borrelia burgdorferi at 2.25A resolution, iodide soak

Analyse Crystal structure of a plasmid partition protein from borrelia burgdorferi at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3K9G
Type: protein
Length: 226 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pf-32 protein
UniProt: O68233
Ligands: NA, IOD
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pf-32 protein	protein	226	39% helix, 20% strand	O68233

Ligands and binding sites

NA · Sodium ion · metal · chains A
IOD · Iodide ion · ion · 12 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.55	0.90	16	IOD

Compared structures

3K9G · CRYSTAL STRUCTURE OF A PLASMID PARTITION PROTEIN FROM BORRELIA BURGDORFERI AT 2.25A… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O68233
Elsewhere: RCSB PDB 3K9G · PDBe 3K9G · UniProt O68233

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