Research workbench

M. acetivorans molybdate-binding protein (moda) in citrate-bound open form

Analyse M. acetivorans molybdate-binding protein (moda) in citrate-bound open form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3K6V
Type: protein
Length: 312 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Solute-binding protein MA_0280
UniProt: Q8TTZ5
Pockets: 1 · best druggability 0.40

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Solute-binding protein MA_0280	protein	312	38% helix, 24% strand	Q8TTZ5

Ligands and binding sites

CIT · Citric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	147	0.40	0.74	30	CIT

Compared structures

3K6V · M. acetivorans Molybdate-Binding Protein (ModA) in Citrate-Bound Open Form · the same entry in another collection · chain A against A, TM-score 1.00
Q8TTZ5 · AlphaFold monomer V2.0 prediction for uncharacterized solute-binding protein MA_0280… · a predicted model of the same protein · chain A against A, TM-score 0.74

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8TTZ5
Elsewhere: RCSB PDB 3K6V · PDBe 3K6V · UniProt Q8TTZ5

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