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Crystal structures of pseudomonas syringae pv. tomato DC3000 quinone oxidoreductase complexed with NADPH

Analyse Crystal structures of pseudomonas syringae pv. tomato DC3000 quinone… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3JYN
Type: protein
Length: 325 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Quinone oxidoreductase
EC: 1.6.5.5
UniProt: Q88B47
Ligands: NDP
Pockets: 3 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Quinone oxidoreductase (EC 1.6.5.5)	protein	325	34% helix, 26% strand	Q88B47

Ligands and binding sites

NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	516	0.79	0.86	57	NDP
2	52	0.43	0.83	17	empty
3	100	0.40	0.76	16	empty

Compared structures

3JYN · Crystal structures of Pseudomonas syringae pv. Tomato DC3000 qui oxidoreductase complexed… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q88B47
Elsewhere: RCSB PDB 3JYN · PDBe 3JYN · UniProt Q88B47

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