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Crystal structure of the coenzyme pqq synthesis protein (pqqb) from pseudomonas putida

Analyse Crystal structure of the coenzyme pqq synthesis protein (pqqb) from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3JXP
Type: protein
Length: 304 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coenzyme pqq synthesis protein B
UniProt: Q88QV5
Ligands: ZN, CL
Pockets: 2 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coenzyme pqq synthesis protein B	protein	304	23% helix, 25% strand	Q88QV5

Ligands and binding sites

ZN · Zinc ion · metal · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	342	0.60	0.77	50	CL
2	102	0.34	0.73	17	empty

Compared structures

3JXP · Crystal Structure of the Coenzyme PQQ Synthesis Protein (PqqB) from Pseudomonas putida · the same entry in another collection · chain A against A, TM-score 1.00
Q88QV5 · AlphaFold monomer V2.0 prediction for coenzyme pqq synthesis protein B (Q88QV5) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q88QV5
Elsewhere: RCSB PDB 3JXP · PDBe 3JXP · UniProt Q88QV5

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