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Helical model of tubz-bt four-stranded filament

Analyse Helical model of tubz-bt four-stranded filament in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3J4S
Type: protein
Length: 414 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: FTSZ/TUBULIN-related protein
UniProt: Q8KNP3
Ligands: GDP
Pockets: 6 · best druggability 0.73

Structure

electron microscopy · 1 distinct chain · 47% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	FTSZ/TUBULIN-related protein	protein	414	47% helix, 17% strand	Q8KNP3

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.73	0.93	27	empty
2	284	0.65	0.82	50	GDP
3	131	0.58	0.83	29	empty
4	55	0.55	0.89	24	empty
5	276	0.52	0.75	35	empty

Compared structures

3J4S · Helical Model of TubZ-Bt four-stranded filament · the same entry in another collection · chain A against A, TM-score 1.00
Q8KNP3 · AlphaFold monomer V2.0 prediction for tubulin-like protein tubz (Q8KNP3) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8KNP3
Elsewhere: RCSB PDB 3J4S · PDBe 3J4S · UniProt Q8KNP3

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