Research workbench
Crystal structure of a domain of functionally unknown protein from thermus thermophilus HB8
Analyse Crystal structure of a domain of functionally unknown protein from thermus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3IX7
- Type
- protein
- Length
- 261 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein TTHA0540
- UniProt
- Q5SKV3
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 54% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein TTHA0540 | protein | 131 | 53% helix, 14% strand | Q5SKV3 |
| B | Uncharacterized protein TTHA0540 | protein | 130 | 55% helix, 12% strand | Q5SKV3 |
Ligands and binding sites
- ACY · Acetic acid · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.49 | 0.76 | 38 | empty |
Interfaces
1 interface between chains.
- A–B · 1129 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 3IX7 · Crystal structure of a domain of functionally unknown protein from Thermus thermophilus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5SKV3 · AlphaFold monomer V2.0 prediction for uncharacterized pin and tram- domain containing… · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SKV3
- Elsewhere: RCSB PDB 3IX7 · PDBe 3IX7 · UniProt Q5SKV3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.