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Crystal structure of a FAD-dependent pyridine nucleotide-disulphide oxidoreductase from desulfovibrio vulgaris

Analyse Crystal structure of a FAD-dependent pyridine nucleotide-disulphide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3IWA
Type: protein
Length: 397 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
EC: 1.6.-.-
UniProt: A1V9T4
Ligands: CA
Pockets: 2 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	FAD-dependent pyridine nucleotide-disulphide oxidoreductase (EC 1.6.-.-)	protein	397	28% helix, 32% strand	A1V9T4

Ligands and binding sites

CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	651	0.69	0.77	77	empty
2	75	0.33	0.74	17	empty

Compared structures

3IWA · Crystal structure of a FAD-dependent pyridine nucleotide-disulphide oxidoreductase from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt A1V9T4
Elsewhere: RCSB PDB 3IWA · PDBe 3IWA · UniProt A1V9T4

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