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The refined structure of vitamin D-dependent calcium- binding protein from bovine intestine. molecular details, ion binding, and implications for the structure of other calcium-binding proteins

Analyse The refined structure of vitamin D-dependent calcium- binding protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3ICB
Type
protein
Length
75 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Calcium-binding protein
UniProt
P02633
Ligands
CA, SO4

Structure

x-ray diffraction · 1 distinct chain · 57% helix, 3% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACalcium-binding proteinprotein7557% helix, 3% strandP02633

Ligands and binding sites

  • CA · Calcium ion · metal · 2 copies · chains A
  • SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 3ICB · The refined structure of vitamin D-dependent calcium-binding protein from bovine… · the same entry in another collection · chain A against A, TM-score 1.00
  • P02633 · AlphaFold monomer V2.0 prediction for protein S100-G (P02633) · a predicted model of the same protein · chain A against A, TM-score 0.90

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