Research workbench

Calcium-dependent protein kinase 1 from toxoplasma gondii (TGCDPK1)

Analyse Calcium-dependent protein kinase 1 from toxoplasma gondii (TGCDPK1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3I79
Type: protein
Length: 455 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Calmodulin-domain protein kinase 1
EC: 2.7.11.17
UniProt: Q9BJF5
Pockets: 5 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Calmodulin-domain protein kinase 1 (EC 2.7.11.17)	protein	455	53% helix, 12% strand	Q9BJF5

Ligands and binding sites

EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1138	0.82	0.83	129	empty
2	57	0.69	0.96	16	empty
3	95	0.49	0.82	21	empty
4	106	0.40	0.76	20	empty
5	57	0.27	0.72	12	empty

Compared structures

3I79 · Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9BJF5
Elsewhere: RCSB PDB 3I79 · PDBe 3I79 · UniProt Q9BJF5

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