Research workbench
Crystal structure of a betagamma-crystallin from an archaea
Analyse Crystal structure of a betagamma-crystallin from an archaea in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3HZ2
- Type
- protein
- Length
- 336 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BETA/GAMA crystallin family protein
- UniProt
- Q8TMX3
- Ligands
- CA
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | BETA/GAMA crystallin family protein | protein | 84 | 8% helix, 49% strand | Q8TMX3 |
Ligands and binding sites
- CA · Calcium ion · metal · 8 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 650 | 0.65 | 0.75 | 70 | CA |
Interfaces
5 interfaces between chains.
- C–D · 263 Ų buried · 8 hydrogen bonds · protein-protein
- B–D · 261 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 105 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 104 Ų buried · 0 hydrogen bonds · protein-protein
- A–D · 90 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3HZ2 · Crystal structure of a betagamma-crystallin from an Archaea · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8TMX3
- Elsewhere: RCSB PDB 3HZ2 · PDBe 3HZ2 · UniProt Q8TMX3
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