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Crystal structure of putative pilm protein from pseudomonas aeruginosa 2192

Analyse Crystal structure of putative pilm protein from pseudomonas aeruginosa 2192 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3HG9
Type: protein
Length: 239 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pilm
UniProt: Q6X3P5
Ligands: NI
Pockets: 2 · best druggability 0.41

Structure

x-ray diffraction · 2 distinct chains · 22% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pilm	protein	119	22% helix, 23% strand	Q6X3P5
B	Pilm	protein	120	23% helix, 26% strand	Q6X3P5

Ligands and binding sites

NI · Nickel (II) ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.41	0.81	20	empty
2	58	0.25	0.72	16	empty

Interfaces

1 interface between chains.

A–B · 2252 Å² buried · 32 hydrogen bonds · protein-protein

Compared structures

3HG9 · CRYSTAL STRUCTURE OF putative pilM protein from Pseudomonas aeruginosa 2192 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6X3P5
Elsewhere: RCSB PDB 3HG9 · PDBe 3HG9 · UniProt Q6X3P5

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