Research workbench
Crystal structure of nucleosome assembly protein from plasmodium falciparum
Analyse Crystal structure of nucleosome assembly protein from plasmodium falciparum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GYV
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleosome assembly protein 1, putative
- UniProt
- Q8I608
- Ligands
- IOD
- Pockets
- 2 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleosome assembly protein 1, putative | protein | 187 | 53% helix, 15% strand | Q8I608 |
Ligands and binding sites
- IOD · Iodide ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.40 | 0.79 | 14 | empty |
| 2 | 90 | 0.35 | 0.75 | 13 | empty |
Compared structures
- 3GYV · Crystal structure of nucleosome assembly protein from Plasmodium falciparum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8I608
- Elsewhere: RCSB PDB 3GYV · PDBe 3GYV · UniProt Q8I608
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