Research workbench
Crystal structure of human HDAC6 zinc finger domain and ubiquitin C- terminal peptide rlrgg
Analyse Crystal structure of human HDAC6 zinc finger domain and ubiquitin C- terminal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GV4
- Type
- protein
- Length
- 103 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histone deacetylase 6; Ubiquitin C-terminal peptide rlrgg
- EC
- 3.5.1.98
- UniProt
- Q9UBN7
- Ligands
- ZN, CA
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histone deacetylase 6 (EC 3.5.1.98) | protein | 99 | 26% helix, 18% strand | Q9UBN7 |
| H | Ubiquitin C-terminal peptide rlrgg | protein | 4 | 0% helix, 0% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–H · 328 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 3GV4 · Crystal structure of human HDAC6 zinc finger domain and ubiquitin C-terminal peptide RLRGG · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBN7 · AlphaFold monomer V2.0 prediction for histone deacetylase 6 (Q9UBN7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBN7
- Elsewhere: RCSB PDB 3GV4 · PDBe 3GV4 · UniProt Q9UBN7
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