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N and GTPase domains of the signal sequence recognition protein ffh from thermus aquaticus

Analyse N and GTPase domains of the signal sequence recognition protein ffh from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1FFH
Type: protein
Length: 287 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ffh
UniProt: O07347
Ligands: MG
Pockets: 3 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 55% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ffh	protein	287	55% helix, 13% strand	O07347

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.42	0.78	17	empty
2	54	0.35	0.79	21	empty
3	54	0.27	0.74	15	empty

Compared structures

1FFH · N and GTPase domains of the signal sequence recognition protein ffh from thermus aquaticus · the same entry in another collection · chain A against A, TM-score 1.00
O07347 · AlphaFold monomer V2.0 prediction for signal recognition particle protein (O07347) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O07347
Elsewhere: RCSB PDB 1FFH · PDBe 1FFH · UniProt O07347

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