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Structure of the periplasmic GLUCOSE/GALACTOSE receptor of salmonella typhimurium

Analyse Structure of the periplasmic GLUCOSE/GALACTOSE receptor of salmonella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3GBP
Type: protein
Length: 305 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Galactose-binding protein
UniProt: P23905
Ligands: BGC, CA
Pockets: 1 · best druggability 0.27

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Galactose-binding protein	protein	305	46% helix, 20% strand	P23905

Ligands and binding sites

BGC · beta-D-glucopyranose · sugar · chains A
CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.27	0.74	15	empty

Compared structures

3GBP · Structure of the periplasmic GLUCOSE/GALACTOSE receptor of salmonella typhimurium · the same entry in another collection · chain A against A, TM-score 1.00
P23905 · AlphaFold monomer V2.0 prediction for D-galactose-binding periplasmic protein (P23905) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P23905
Elsewhere: RCSB PDB 3GBP · PDBe 3GBP · UniProt P23905

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