Research workbench
Crystal structure of an alcohol dehydrogenase superfamily protein from novosphingobium aromaticivorans
Analyse Crystal structure of an alcohol dehydrogenase superfamily protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3GAZ
- Type
- protein
- Length
- 661 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alcohol dehydrogenase superfamily protein
- UniProt
- Q2G4L9
- Ligands
- CA
- Pockets
- 3 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alcohol dehydrogenase superfamily protein | protein | 331 | 32% helix, 27% strand | Q2G4L9 |
| B | Alcohol dehydrogenase superfamily protein | protein | 330 | 32% helix, 26% strand | Q2G4L9 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1067 | 0.82 | 0.83 | 103 | CA |
| 2 | 486 | 0.68 | 0.79 | 50 | CA |
| 3 | 64 | 0.36 | 0.77 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 505 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3GAZ · Crystal structure of an alcohol dehydrogenase superfamily protein from Novosphingobium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2G4L9
- Elsewhere: RCSB PDB 3GAZ · PDBe 3GAZ · UniProt Q2G4L9
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