Research workbench
P38 kinase crystal structure in complex with 6-(2,4-difluoro-phenoxy)- 2-((R)-2-methanesulfonyl-1-methyl-ethylamino)-8-methyl-8H-PYRIDO[2,3- D]PYRIMIDIN-7-one
Analyse P38 kinase crystal structure in complex with 6-(2,4-difluoro-phenoxy)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FLS
- Type
- protein
- Length
- 343 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mitogen-activated protein kinase 14
- EC
- 2.7.11.24
- UniProt
- Q16539
- Ligands
- FLS
- Pockets
- 6 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mitogen-activated protein kinase 14 (EC 2.7.11.24) | protein | 343 | 38% helix, 13% strand | Q16539 |
Ligands and binding sites
- FLS · 6-(2,4-difluorophenoxy)-8-methyl-2-{[(1R)-1-methyl-2-(methylsulfonyl)ethyl]amino}pyrido[2,3-d]pyrimidin-7(8H)-one · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 344 | 0.65 | 0.80 | 41 | FLS |
| 2 | 166 | 0.46 | 0.75 | 26 | empty |
| 3 | 66 | 0.29 | 0.73 | 16 | empty |
| 4 | 52 | 0.28 | 0.74 | 14 | empty |
| 5 | 55 | 0.28 | 0.74 | 19 | empty |
Compared structures
- 3FLS · P38 kinase crystal structure in complex with 6-(2,4-Difluoro-phenoxy)-2-((R)-2-methanesulf… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16539
- Elsewhere: RCSB PDB 3FLS · PDBe 3FLS · UniProt Q16539
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