Research workbench
Bim BH3 peptide in complex with BCL-xl
Analyse Bim BH3 peptide in complex with BCL-xl in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FDL
- Type
- protein
- Length
- 168 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apoptosis regulator BCL-X; BCL-2-like protein 11
- UniProt
- Q07817, O43521
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Apoptosis regulator BCL-X | protein | 143 | 80% helix, 0% strand | Q07817 |
| B | BCL-2-like protein 11 | protein | 25 | 76% helix, 0% strand | O43521 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.51 | 0.78 | 30 | empty |
| 2 | 79 | 0.31 | 0.73 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1159 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 3FDL · Bim BH3 peptide in complex with Bcl-xL · the same entry in another collection · chain A against A, TM-score 1.00
- Q07817 · AlphaFold monomer V2.0 prediction for BCL-2-like protein 1 (Q07817) · a predicted model of the same protein · chain A against A, TM-score 0.77
- O43521 · AlphaFold monomer V2.0 prediction for BCL-2-like protein 11 (O43521) · a predicted model of the same protein · chain B against A, TM-score 0.74
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q07817
- Every structure of UniProt O43521
- Elsewhere: RCSB PDB 3FDL · PDBe 3FDL · UniProt Q07817 · UniProt O43521
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