Research workbench
D431N mutant VP2 protein of infectious bursal disease virus; derived T=1 particles
Analyse D431N mutant VP2 protein of infectious bursal disease virus; derived T=1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FBM
- Type
- protein
- Length
- 428 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyprotein
- UniProt
- Q9WI42
- Ligands
- CA
- Pockets
- 4 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyprotein | protein | 428 | 12% helix, 45% strand | Q9WI42 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 170 | 0.66 | 0.86 | 35 | empty |
| 2 | 204 | 0.60 | 0.81 | 39 | empty |
| 3 | 83 | 0.41 | 0.79 | 24 | empty |
| 4 | 62 | 0.33 | 0.75 | 16 | empty |
Compared structures
- 3FBM · D431N Mutant VP2 Protein of Infectious Bursal Disease Virus; Derived T=1 Particles · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WI42
- Elsewhere: RCSB PDB 3FBM · PDBe 3FBM · UniProt Q9WI42
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