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Crystal structure of the R132K:R111L:L121E:R59W mutant of cellular retinoic acid-binding protein type II complexed with C15-aldehyde (a retinal analog) at 1.95 ångström resolution.

Analyse Crystal structure of the R132K:R111L:L121E:R59W mutant of cellular retinoic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3F8A
Type: protein
Length: 137 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cellular retinoic acid-binding protein 2
UniProt: P29373
Ligands: LSR
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cellular retinoic acid-binding protein 2	protein	137	12% helix, 55% strand	P29373

Ligands and binding sites

LSR · 1,3,3-trimethyl-2-[(1E,3E)-3-methylpenta-1,3-dien-1-yl]cyclohexene · ligand · chains A
B3P · 2-[3-(2-hydroxy-1,1-dihydroxymethyl-ethylamino)-propylamino]-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	575	0.75	0.82	47	B3P, LSR

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

3F8A · Crystal Structure of the R132K:R111L:L121E:R59W Mutant of Cellular Retinoic Acid-Binding… · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt P29373
Elsewhere: RCSB PDB 3F8A · PDBe 3F8A · UniProt P29373

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