Research workbench
Crystal structure of the cellulase CEL48F from C. cellulolyticum in complex with cellotetraose
Analyse Crystal structure of the cellulase CEL48F from C. cellulolyticum in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1F9D
- Type
- protein
- Length
- 629 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-1,4-beta-glucanase F
- EC
- 3.2.1.4
- UniProt
- P37698
- Ligands
- GLC, CA
- Pockets
- 4 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-glucanase F (EC 3.2.1.4) | protein | 629 | 39% helix, 16% strand | P37698 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1109 | 0.86 | 0.87 | 107 | GLC |
| 2 | 58 | 0.44 | 0.83 | 19 | empty |
| 3 | 57 | 0.34 | 0.77 | 14 | empty |
| 4 | 56 | 0.34 | 0.77 | 13 | empty |
Compared structures
- 1F9D · Crystal structure of the cellulase CEL48F from C. cellulolyticum in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P37698 · AlphaFold monomer V2.0 prediction for endoglucanase F (P37698) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37698
- Elsewhere: RCSB PDB 1F9D · PDBe 1F9D · UniProt P37698
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