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Structure of methanosarcina barkeri monomethylamine corrinoid protein

Analyse Structure of methanosarcina barkeri monomethylamine corrinoid protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3EZX
Type: protein
Length: 212 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Monomethylamine corrinoid protein 1
UniProt: O30641
Ligands: HCB, MG
Pockets: 2 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 58% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Monomethylamine corrinoid protein 1	protein	212	58% helix, 10% strand	O30641

Ligands and binding sites

HCB · 5-hydroxybenzimidazolylcobamide · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	308	0.61	0.78	41	HCB
2	55	0.28	0.74	13	empty

Compared structures

3EZX · Structure of Methanosarcina barkeri monomethylamine corrinoid protein · the same entry in another collection · chain A against A, TM-score 1.00
O30641 · AlphaFold monomer V2.0 prediction for monomethylamine corrinoid protein 1 (O30641) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O30641
Elsewhere: RCSB PDB 3EZX · PDBe 3EZX · UniProt O30641

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