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Crystal structure of GTP complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine

Analyse Crystal structure of GTP complex of yellow fever virus methyltransferase and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3EVD
Type: protein
Length: 261 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA-directed RNA polymerase NS5
EC: 2.1.1.56, 2.7.7.48
UniProt: P03314
Ligands: GTP, SAH
Pockets: 1 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA-directed RNA polymerase NS5 (EC 2.1.1.56, 2.7.7.48)	protein	261	37% helix, 18% strand	P03314

Ligands and binding sites

GTP · Guanosine-5'-triphosphate · ligand · 2 copies · chains A
SAH · S-adenosyl-L-homocysteine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	532	0.65	0.76	47	SAH

Compared structures

3EVD · Crystal structure of GTP complex of yellow fever virus methyltransferase and… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03314
Elsewhere: RCSB PDB 3EVD · PDBe 3EVD · UniProt P03314

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