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Structures and conformations in solution of the signal recognition particle receptor from the archaeon pyrococcus furiosus

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PDB: 3E70
Type: protein
Length: 307 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Signal recognition particle receptor
UniProt: Q8U051
Ligands: GDP, MG
Pockets: 4 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
C	Signal recognition particle receptor	protein	307	53% helix, 15% strand	Q8U051

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains C
MG · Magnesium ion · metal · chains C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	64	0.37	0.78	11	empty
2	81	0.34	0.75	19	empty
3	52	0.31	0.77	16	MG
4	54	0.30	0.76	14	GDP

Compared structures

3E70 · Structures and conformations in solution of the Signal Recognition Particle Receptor from… · the same entry in another collection · chain C against C, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8U051
Elsewhere: RCSB PDB 3E70 · PDBe 3E70 · UniProt Q8U051

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