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Crystal structure of human RAB3B GTPase bound with GDP

Analyse Crystal structure of human RAB3B GTPase bound with GDP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3DZ8
Type: protein
Length: 178 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RAS-related protein rab-3B
UniProt: P20337
Ligands: GDP, UNX

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RAS-related protein rab-3B	protein	178	39% helix, 30% strand	P20337

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A
UNX · Unknown atom or ion · ion · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

3DZ8 · Crystal structure of human Rab3B GTPase bound with GDP · the same entry in another collection · chain A against A, TM-score 1.00
P20337 · AlphaFold monomer V2.0 prediction for RAS-related protein rab-3B (P20337) · a predicted model of the same protein · chain A against A, TM-score 0.82

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P20337
Elsewhere: RCSB PDB 3DZ8 · PDBe 3DZ8 · UniProt P20337

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