Research workbench
Structure of IDP00107, a potential N-acetyl-gamma- glutamylphosphate reductase from shigella flexneri
Analyse Structure of IDP00107, a potential N-acetyl-gamma- glutamylphosphate reductase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DR3
- Type
- protein
- Length
- 335 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N-acetyl-gamma-glutamyl-phosphate reductase
- EC
- 1.2.1.38
- UniProt
- P59310
- Ligands
- MLT, NA
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | protein | 335 | 34% helix, 24% strand | P59310 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 482 | 0.69 | 0.79 | 58 | empty |
| 2 | 89 | 0.35 | 0.75 | 18 | empty |
| 3 | 50 | 0.24 | 0.73 | 18 | empty |
Compared structures
- 3DR3 · Structure of IDP00107, a potential N-acetyl-gamma-glutamylphosphate reductase from… · the same entry in another collection · chain A against A, TM-score 1.00
- P59310 · AlphaFold monomer V2.0 prediction for N-acetyl-gamma-glutamyl- phosphate reductase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P59310
- Elsewhere: RCSB PDB 3DR3 · PDBe 3DR3 · UniProt P59310
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.