Research workbench
Crystal structure of the drosophila kinesin family member nod in complex with ADP
Analyse Crystal structure of the drosophila kinesin family member nod in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DC4
- Type
- protein
- Length
- 291 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Kinesin-like protein nod
- UniProt
- P18105
- Ligands
- ADP, MG
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Kinesin-like protein nod | protein | 291 | 33% helix, 24% strand | P18105 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 108 | 0.48 | 0.80 | 20 | empty |
Compared structures
- 3DC4 · Crystal structure of the Drosophila kinesin family member NOD in complex with ADP · the same entry in another collection · chain A against A, TM-score 1.00
- P18105 · AlphaFold monomer V2.0 prediction for kinesin-like protein nod (P18105) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P18105
- Elsewhere: RCSB PDB 3DC4 · PDBe 3DC4 · UniProt P18105
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