MolNFT v1 · #266985 · protein
AlphaFold monomer V2.0 prediction for kinesin-like protein nod (P18105)
P18105: “AlphaFold monomer V2.0 prediction for kinesin-like protein nod (P18105)”. 7 pockets (best druggability 0.41). MolNFT v1 #266985 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P18105
- Type
- protein
- Length
- 666 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D671490EE06E75975e90D7F99F73B20BE618744
- Molecule
- Kinesin-like protein nod
- UniProt
- P18105
- Pockets
- 7 · best druggability 0.41
Structure
1 distinct chain · 32% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Kinesin-like protein nod | protein | 666 | 32% helix, 11% strand | P18105 |
Pockets
7 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.41 | 0.82 | 13 | empty |
| 2 | 74 | 0.40 | 0.79 | 14 | empty |
| 3 | 113 | 0.38 | 0.75 | 23 | empty |
| 4 | 93 | 0.36 | 0.74 | 13 | empty |
| 5 | 66 | 0.35 | 0.78 | 21 | empty |
Compared structures
- 3DCB · Crystal structure of the Drosophila kinesin family member NOD in complex with AMPPNP · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 3DCB · Crystal structure of the drosophila kinesin family member nod in complex with amppnp · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 3DCO · Drosophila NOD (3DC4) and Bovine Tubulin (1JFF) Docked into the 11-Angstrom Cryo-EM Map… · an experimental structure of the same protein · chain A against N, TM-score 0.43
- 3DCO · Drosophila nod (3DC4) and bovine tubulin (1JFF) docked into the 11- ångström cryo-EM MAP… · an experimental structure of the same protein · chain A against N, TM-score 0.43
- 3DC4 · Crystal structure of the Drosophila kinesin family member NOD in complex with ADP · an experimental structure of the same protein · chain A against A, TM-score 0.43
- 3DC4 · Crystal structure of the drosophila kinesin family member nod in complex with ADP · an experimental structure of the same protein · chain A against A, TM-score 0.43
- 3PXN · Crystal structure of the Drosophila kinesin family member Kin10/NOD in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.42
- 3PXN · Crystal structure of the drosophila kinesin family member KIN10/NOD in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.42
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P18105
- Elsewhere: UniProt P18105 · AlphaFold DB P18105
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