MolNFT v1 · #61126 · protein

Crystal structure of the drosophila kinesin family member nod in complex with amppnp

3DCB · Kinesin-like protein nod: “Crystal structure of the drosophila kinesin family member nod in complex with amppnp”. X-ray diffraction, 2 ligands (ANP, MG), 3 pockets (best druggability 0.60). MolNFT v1 #61126 on GenesisL1: 3D…

PDB: 3DCB
Type: protein
Length: 299 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kinesin-like protein nod
UniProt: P18105
Ligands: ANP, MG
Pockets: 3 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Kinesin-like protein nod	protein	299	33% helix, 23% strand	P18105

Ligands and binding sites

ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	247	0.60	0.79	31	empty
2	86	0.39	0.77	16	empty
3	53	0.31	0.77	23	MG

Compared structures

3DCB · Crystal structure of the Drosophila kinesin family member NOD in complex with AMPPNP · the same entry in another collection · chain A against A, TM-score 1.00
P18105 · AlphaFold monomer V2.0 prediction for kinesin-like protein nod (P18105) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P18105
Elsewhere: RCSB PDB 3DCB · PDBe 3DCB · UniProt P18105

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.