Research workbench
Crystal structure of RAB5A from plasmodium falciparum, PFB0500C
Analyse Crystal structure of RAB5A from plasmodium falciparum, PFB0500C in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CLV
- Type
- protein
- Length
- 175 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RAB5 protein, putative
- UniProt
- O96193
- Ligands
- GDP, CL
- Pockets
- 1 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RAB5 protein, putative | protein | 175 | 35% helix, 23% strand | O96193 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 130 | 0.43 | 0.76 | 26 | GDP |
Compared structures
- 3CLV · Crystal Structure of Rab5a from plasmodium falciparum, PFB0500c · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O96193
- Elsewhere: RCSB PDB 3CLV · PDBe 3CLV · UniProt O96193
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