Research workbench
Crystal structure of human methyltransferase-like protein 1
Analyse Crystal structure of human methyltransferase-like protein 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CKK
- Type
- protein
- Length
- 196 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA (guanine-N(7)-)-methyltransferase
- EC
- 2.1.1.33
- UniProt
- Q9UBP6
- Ligands
- SAM
- Pockets
- 1 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) | protein | 196 | 35% helix, 23% strand | Q9UBP6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 201 | 0.52 | 0.77 | 27 | SAM, GOL |
Compared structures
- 3CKK · Crystal structure of human methyltransferase-like protein 1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBP6 · AlphaFold monomer V2.0 prediction for tRNA (guanine-N(7)-)-methyltransferase (Q9UBP6) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBP6
- Elsewhere: RCSB PDB 3CKK · PDBe 3CKK · UniProt Q9UBP6
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