Research workbench
Crystal structure of homomeric yeast LSM3 exhibiting novel octameric ring organisation
Analyse Crystal structure of homomeric yeast LSM3 exhibiting novel octameric ring… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BW1
- Type
- protein
- Length
- 172 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- U6 snrna-associated sm-like protein LSM3
- UniProt
- P57743
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | U6 snrna-associated sm-like protein LSM3 | protein | 86 | 16% helix, 49% strand | P57743 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains B
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.46 | 0.84 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1000 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 3BW1 · Crystal structure of homomeric yeast Lsm3 exhibiting novel octameric ring organisation · the same entry in another collection · chain A against A, TM-score 1.00
- P57743 · AlphaFold monomer V2.0 prediction for U6 snrna-associated sm-like protein LSM3 (P57743) · a predicted model of the same protein · chain A against A, TM-score 0.82
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P57743
- Elsewhere: RCSB PDB 3BW1 · PDBe 3BW1 · UniProt P57743
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