Research workbench
Lipoxygenase-1 (soybean) I553L mutant
Analyse Lipoxygenase-1 (soybean) I553L mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BNB
- Type
- protein
- Length
- 818 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Seed lipoxygenase-1
- EC
- 1.13.11.12
- UniProt
- P08170
- Ligands
- FE
- Pockets
- 16 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Seed lipoxygenase-1 (EC 1.13.11.12) | protein | 818 | 43% helix, 15% strand | P08170 |
Ligands and binding sites
- FE · Fe (III) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
16 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 902 | 0.82 | 0.84 | 83 | empty |
| 2 | 53 | 0.72 | 0.99 | 16 | empty |
| 3 | 50 | 0.71 | 0.99 | 25 | empty |
| 4 | 409 | 0.70 | 0.82 | 46 | empty |
| 5 | 175 | 0.52 | 0.78 | 23 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08170
- Elsewhere: RCSB PDB 3BNB · PDBe 3BNB · UniProt P08170
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