Research workbench
Structure of the P368G mutant of PMM/PGM in complex with its substrate
Analyse Structure of the P368G mutant of PMM/PGM in complex with its substrate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BKQ
- Type
- protein
- Length
- 458 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PHOSPHOMANNOMUTASE/PHOSPHOGLUCOMUTASE
- EC
- 5.4.2.8, 5.4.2.2
- UniProt
- P26276
- Ligands
- G1P, ZN
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | PHOSPHOMANNOMUTASE/PHOSPHOGLUCOMUTASE (EC 5.4.2.8, 5.4.2.2) | protein | 458 | 38% helix, 24% strand | P26276 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 476 | 0.71 | 0.81 | 53 | G1P |
| 2 | 111 | 0.49 | 0.80 | 20 | empty |
| 3 | 84 | 0.43 | 0.80 | 16 | empty |
| 4 | 64 | 0.32 | 0.76 | 17 | empty |
Modifications
Observed in the structure: 1 modified (phosphorylation).
Compared structures
- 3BKQ · Structure of the P368G mutant of PMM/PGM in complex with its substrate · the same entry in another collection · chain X against X, TM-score 1.00
- P26276 · AlphaFold monomer V2.0 prediction for PHOSPHOMANNOMUTASE/PHOSPHOGLUCOMUTASE (P26276) · a predicted model of the same protein · chain X against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P26276
- Elsewhere: RCSB PDB 3BKQ · PDBe 3BKQ · UniProt P26276
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