Research workbench
Crystal structure of T57S substituted lush protein complexed with ethanol
Analyse Crystal structure of T57S substituted lush protein complexed with ethanol in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3B86
- Type
- protein
- Length
- 248 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- General odorant-binding protein lush
- UniProt
- O02372
- Pockets
- 4 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | General odorant-binding protein lush | protein | 124 | 63% helix, 2% strand | O02372 |
Ligands and binding sites
- ACT · Acetate ion · additive · 4 copies · chains A, B
- PG4 · Tetraethylene glycol · additive · 2 copies · chains A, B
- EOH · Ethanol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 214 | 0.80 | 0.93 | 31 | ACT, PG4, EOH |
| 2 | 223 | 0.80 | 0.92 | 27 | ACT, PG4 |
| 3 | 181 | 0.53 | 0.79 | 32 | ACT |
| 4 | 74 | 0.40 | 0.79 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 697 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 3B86 · Crystal structure of T57S substituted LUSH protein complexed with ethanol · the same entry in another collection · chain A against A, TM-score 1.00
- O02372 · AlphaFold monomer V2.0 prediction for general odorant-binding protein lush (O02372) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O02372
- Elsewhere: RCSB PDB 3B86 · PDBe 3B86 · UniProt O02372
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.