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Crystal structure of msba from salmonella typhimurium with amppnp

Analyse Crystal structure of msba from salmonella typhimurium with amppnp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3B5Y
Type: protein
Length: 2,288 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lipid a export ATP-BINDING/PERMEASE protein msba
EC: 3.6.3.-
UniProt: P63359
Ligands: ANP

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Lipid a export ATP-BINDING/PERMEASE protein msba (EC 3.6.3.-)	protein	572	0% helix, 0% strand	P63359

Ligands and binding sites

ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

2 interfaces between chains.

A–B · 656 Å² buried · 0 hydrogen bonds · protein-protein
C–D · 648 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

3B5Y · Crystal Structure of MsbA from Salmonella typhimurium with AMPPNP · the same entry in another collection · chain A against A, TM-score 1.00
P63359 · AlphaFold monomer V2.0 prediction for ATP-dependent lipid a-core flippase (P63359) · a predicted model of the same protein · chain A against A, TM-score 0.78

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63359
Elsewhere: RCSB PDB 3B5Y · PDBe 3B5Y · UniProt P63359

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