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Crystal structure of the laminarinase catalytic domain from thermotoga maritima MSB8

Analyse Crystal structure of the laminarinase catalytic domain from thermotoga maritima… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3AZX
Type: protein
Length: 504 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Laminarinase
EC: 3.2.1.39
UniProt: Q9WXN1
Ligands: CA
Pockets: 2 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Laminarinase (EC 3.2.1.39)	protein	252	8% helix, 50% strand	Q9WXN1

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	563	0.68	0.78	62	empty
2	242	0.60	0.79	33	empty

Interfaces

1 interface between chains.

A–B · 716 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

3AZX · Crystal structure of the laminarinase catalytic domain from Thermotoga maritima MSB8 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9WXN1
Elsewhere: RCSB PDB 3AZX · PDBe 3AZX · UniProt Q9WXN1

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