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Structure of trehalose maltose binding protein from thermococcus litoralis

Analyse Structure of trehalose maltose binding protein from thermococcus litoralis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1EU8
Type: protein
Length: 407 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TREHALOSE/MALTOSE binding protein
UniProt: O51923
Ligands: GLC, PT, CL
Pockets: 2 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TREHALOSE/MALTOSE binding protein	protein	407	48% helix, 18% strand	O51923

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
PT · Platinum (II) ion · metal · 3 copies · chains A
CL · Chloride ion · ion · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	129	0.75	0.94	25	GLC
2	53	0.38	0.80	13	empty

Compared structures

1EU8 · Structure of trehalose maltose binding protein from thermococcus litoralis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O51923
Elsewhere: RCSB PDB 1EU8 · PDBe 1EU8 · UniProt O51923

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