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Crystal structure of D-serine dehydratase from chicken kidney (2,3-dap complex)

Analyse Crystal structure of D-serine dehydratase from chicken kidney (2,3-dap complex) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3ANV
Type: protein
Length: 373 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: D-serine dehydratase
EC: 4.3.1.18
UniProt: A9CP13
Ligands: PLP, 2RA, ZN, CL
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	D-serine dehydratase (EC 4.3.1.18)	protein	373	37% helix, 25% strand	A9CP13

Ligands and binding sites

PLP · Pyridoxal-5'-phosphate · ligand · chains A
2RA · 3-amino-D-alanine · ligand · chains A
ZN · Zinc ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	184	0.52	0.78	32	PLP, ZN, 2RA
2	51	0.27	0.74	15	empty

Compared structures

3ANV · Crystal structure of D-serine dehydratase from chicken kidney (2,3-DAP complex) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A9CP13
Elsewhere: RCSB PDB 3ANV · PDBe 3ANV · UniProt A9CP13

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