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Crystal structure of the pH domain of evectin-2 from human complexed with O-phospho-L-serine

Analyse Crystal structure of the pH domain of evectin-2 from human complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3AJ4
Type
protein
Length
224 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Pleckstrin homology domain-containing family B member 2
UniProt
Q96CS7
Ligands
SEP

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 39% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BPleckstrin homology domain-containing family B member 2protein11222% helix, 39% strandQ96CS7

Ligands and binding sites

  • SEP · Phosphoserine · ligand · chains A, B
  • EDO · 1,2-ethanediol · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 756 Ų buried · 6 hydrogen bonds · protein-protein

Compared structures

  • 3AJ4 · Crystal structure of the PH domain of Evectin-2 from human complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q96CS7 · AlphaFold monomer V2.0 prediction for pleckstrin homology domain- containing family B… · a predicted model of the same protein · chain A against A, TM-score 0.96

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