Research workbench
Crystal structure of selenomethionine substituted 4-pyridoxolactonase from mesorhizobium loti
Analyse Crystal structure of selenomethionine substituted 4-pyridoxolactonase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3AJ3
- Type
- protein
- Length
- 273 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 4-pyridoxolactonase
- EC
- 3.1.1.27
- UniProt
- Q988B9
- Ligands
- ZN, PO4
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 4-pyridoxolactonase (EC 3.1.1.27) | protein | 273 | 29% helix, 25% strand | Q988B9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.61 | 0.92 | 19 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3AJ3 · Crystal structure of selenomethionine substituted 4-pyridoxolactonase from Mesorhizobium… · the same entry in another collection · chain A against A, TM-score 1.00
- Q988B9 · AlphaFold monomer V2.0 prediction for 4-pyridoxolactonase (Q988B9) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q988B9
- Elsewhere: RCSB PDB 3AJ3 · PDBe 3AJ3 · UniProt Q988B9
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