Research workbench
Crystal structure of recombinant agrocybe aegerita lectin, raal, complex with galactose
Analyse Crystal structure of recombinant agrocybe aegerita lectin, raal, complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2ZGN
- Type
- protein
- Length
- 316 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Anti-tumor lectin
- EC
- 3.1.21.-
- UniProt
- Q6WY08
- Ligands
- GAL
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Anti-tumor lectin (EC 3.1.21.-) | protein | 158 | 3% helix, 53% strand | Q6WY08 |
Ligands and binding sites
- GAL · beta-D-galactopyranose · sugar · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 192 | 0.57 | 0.80 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 895 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 2ZGN · crystal structure of recombinant Agrocybe aegerita lectin, rAAL, complex with galactose · the same entry in another collection · chain A against A, TM-score 1.00
- Q6WY08 · AlphaFold monomer V2.0 prediction for anti-tumor lectin (Q6WY08) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6WY08
- Elsewhere: RCSB PDB 2ZGN · PDBe 2ZGN · UniProt Q6WY08
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