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Family 16 carbohydrate binding module

Analyse Family 16 carbohydrate binding module in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2ZEY
Type: protein
Length: 289 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: S-layer associated multidomain endoglucanase
UniProt: Q9ZA17
Ligands: BMA, MAN, CA
Pockets: 2 · best druggability 0.46

Structure

x-ray diffraction · 2 distinct chains · 2% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	S-layer associated multidomain endoglucanase	protein	145	2% helix, 48% strand	Q9ZA17
B	S-layer associated multidomain endoglucanase	protein	144	2% helix, 47% strand	Q9ZA17

Ligands and binding sites

BMA · beta-D-mannopyranose · sugar · 9 copies · chains A, B
MAN · alpha-D-mannopyranose · sugar · chains A, B
CA · Calcium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	256	0.46	0.72	31	BMA, MAN
2	80	0.30	0.72	20	empty

Interfaces

1 interface between chains.

A–B · 448 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

2ZEY · Family 16 carbohydrate binding module · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ZA17
Elsewhere: RCSB PDB 2ZEY · PDBe 2ZEY · UniProt Q9ZA17

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