Research workbench
Crystal structure of human 15-ketoprostaglandin delta-13- reductase in complex with NADPH and nicotinamide
Analyse Crystal structure of human 15-ketoprostaglandin delta-13- reductase in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2ZB7
- Type
- protein
- Length
- 350 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Prostaglandin reductase 2
- EC
- 1.3.1.48
- UniProt
- Q8N8N7
- Ligands
- NDP, NCA
- Pockets
- 2 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Prostaglandin reductase 2 (EC 1.3.1.48) | protein | 350 | 33% helix, 28% strand | Q8N8N7 |
Ligands and binding sites
- NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
- NCA · Nicotinamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 757 | 0.82 | 0.85 | 75 | NDP, NCA |
| 2 | 267 | 0.63 | 0.80 | 30 | empty |
Compared structures
- 2ZB7 · Crystal structure of human 15-ketoprostaglandin delta-13-reductase in complex with NADPH… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8N8N7 · AlphaFold monomer V2.0 prediction for prostaglandin reductase 2 (Q8N8N7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N8N7
- Elsewhere: RCSB PDB 2ZB7 · PDBe 2ZB7 · UniProt Q8N8N7
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