Research workbench
Crystal structure of the UFC1, UFM1 conjugating enzyme 1
Analyse Crystal structure of the UFC1, UFM1 conjugating enzyme 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2Z6P
- Type
- protein
- Length
- 163 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UFM1-conjugating enzyme 1
- EC
- 6.3.2.19
- UniProt
- Q9Y3C8
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UFM1-conjugating enzyme 1 (EC 6.3.2.19) | protein | 163 | 40% helix, 18% strand | Q9Y3C8 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.49 | 0.84 | 15 | empty |
| 2 | 57 | 0.33 | 0.77 | 16 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 2Z6P · Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y3C8 · AlphaFold monomer V2.0 prediction for ubiquitin-fold modifier- conjugating enzyme 1… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y3C8
- Elsewhere: RCSB PDB 2Z6P · PDBe 2Z6P · UniProt Q9Y3C8
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