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1 a crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium

Analyse 1 a crystal structures of B-DNA reveal sequence-specific binding and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1EN8
Type
DNA
Length
10 nucleotides
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3')
Ligands
CA

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
ADNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3')dna10——

Ligands and binding sites

  • CA · Calcium ion · metal · 4 copies · chains A
  • EOH · Ethanol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 1EN8 · 1 a crystal structures of B-DNA reveal sequence-specific binding and groove-specific… · the same entry in another collection · chain A against A, TM-score 1.00

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