Research workbench
Structure of a twinned crystal of rada
Analyse Structure of a twinned crystal of rada in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2Z43
- Type
- protein
- Length
- 807 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair and recombination protein rada
- UniProt
- Q55075
- Pockets
- 3 · best druggability 0.35
Structure
x-ray diffraction · 3 distinct chains · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 228 | 39% helix, 26% strand | Q55075 |
| B | DNA repair and recombination protein rada | protein | 290 | 45% helix, 21% strand | Q55075 |
| C | DNA repair and recombination protein rada | protein | 289 | 44% helix, 21% strand | Q55075 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.35 | 0.78 | 16 | empty |
| 2 | 70 | 0.34 | 0.76 | 19 | empty |
| 3 | 61 | 0.29 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- B–C · 132 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q55075
- Elsewhere: RCSB PDB 2Z43 · PDBe 2Z43 · UniProt Q55075
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